Widget examples

• Visualization of single-cell RNA seq data
  • 1. Import dependencies
  • 2. Download the data
  • 3. Load the data
  • 3.1. Preprocess the Data For Visualization
  • 3.2 Save the Data to Zarr store
  • 4. Create the Vitessce widget configuration
  • 5. Create the widget
• Visualization of genomic profiles
  • 1. Import dependencies
  • 2. Load the data
  • 3. Convert the data to Vitessce-compatible formats
  • 4. Make a Vitessce configuration
  • 5. Create the widget
• Visualization of Multi-Modal Imaging Data
  • 1. Configure Vitessce
  • 2. Create the Vitessce widget
• Visualization of 3k PBMC reference
  • 1. Import dependencies
  • 2. Download the dataset
  • 3. Load the dataset
  • 3.1 Save the AnnData object to Zarr
  • 4. Create a Vitessce view config
  • 5. Create the Vitessce widget
• Visualization of a Loom file
  • 1. Import dependencies
  • 2. Download data
  • 3. Open Loom file with AnnData’s read_loom
  • 4. Configure Vitessce
  • 5. Render the widget
• Using an existing view config dict
  • 1. Import dependencies
  • 2. Import config of interest as a dict
  • 3. Create the Vitessce widget
• Visualization of 3k PBMC reference from Remote Zarr Store
  • 1. Import dependencies
  • 2. Set the URL for the Remote Dataset
  • 3. Create a Vitessce view config
  • 4. Create the Vitessce widget