vitessce
  • Getting Started
  • Widget examples
    • Visualization of single-cell RNA seq data
    • Visualization of single-cell RNA seq data from H5AD file
    • Configure relative to a base_dir
    • Visualization of single-cell RNA seq data using vitessce.io
    • Visualization of genomic profiles
    • Visualization of Multi-Modal Imaging Data
    • Visualization of OME-TIFF images and segmentation masks
    • Visualization of 3k PBMC reference
    • Visualization of 3k PBMC reference from Remote Zarr Store
    • Visualization of a SpatialData object
    • Visualization of a SpatialData object, blobs example
    • Visualization of a SpatialData object and individual Spatial Elements, local data
    • Visualization of a SpatialData object and individual Spatial Elements, remote data
    • Visualization of a Loom file
    • Using an existing view config dict
    • Programmatic modification of widget configuration
    • Vitessce plugin usage demo
    • Vitessce custom plugin definition
    • Vitessce SpatialQuery plugin usage demo
    • Page mode example
  • Data preparation examples
  • View config API
  • Data preparation APIs
  • Data location options
  • Widget plugins
  • Screenshots
vitessce
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  • Widget examples
  • Edit on GitHub

Widget examples

  • Visualization of single-cell RNA seq data
  • Visualization of single-cell RNA seq data from H5AD file
  • Configure relative to a base_dir
  • Visualization of single-cell RNA seq data using vitessce.io
  • Visualization of genomic profiles
  • Visualization of Multi-Modal Imaging Data
  • Visualization of OME-TIFF images and segmentation masks
  • Visualization of 3k PBMC reference
  • Visualization of 3k PBMC reference from Remote Zarr Store
  • Visualization of a SpatialData object
  • Visualization of a SpatialData object, blobs example
  • Visualization of a SpatialData object and individual Spatial Elements, local data
  • Visualization of a SpatialData object and individual Spatial Elements, remote data
  • Visualization of a Loom file
  • Using an existing view config dict
  • Programmatic modification of widget configuration
  • Vitessce plugin usage demo
  • Vitessce custom plugin definition
  • Vitessce SpatialQuery plugin usage demo
  • Page mode example
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